Markov Models in Molecular Evolution. - to Applications of the Likelihood Function in Molecular Evolution. - to Markov Chain Monte Carlo Methods in Molecular Evolution. - Population Genetics of Molecular Evolution. - Practical Approaches for Data Analysis. - Maximum Likelihood Methods for Detecting Adaptive Protein Evolution. - HyPhy: Hypothesis Testing Using Phylogenies. - Bayesian Analysis of Molecular Evolution Using MrBayes. - Estimation of Divergence Times from Molecular Sequence Data. - Models of Molecular Evolution. - Markov Models of Protein Sequence Evolution. - Models of Microsatellite Evolution. - Genome Rearrangement. - Phylogenetic Hidden Markov Models. - Inferences on Molecular Evolution. - The Evolutionary Causes and Consequences of Base Composition Variation. - Statistical Alignment: Recent Progress New Applications and Challenges. - Estimating Substitution Matrices. - Posterior Mapping and Posterior Predictive Distributions. - Assessing the Uncertainty in Phylogenetic Inference. Language: English